SRR5259931 - Apis mellifera

Basic Information

Run: SRR5259931

Assay Type: AMPLICON

Biosample: SAMN06287538

Bytes: 198430

Center Name: FERA SCIENCE LIMITED

Classification: 16S

Sequencing Information

Instrument: 454 GS FLX+

Library Layout: SINGLE

Bioproject: PRJNA315609

Geographic Information

Country: United Kingdom

Continent: Europe

Location Name: United Kingdom

Latitude/Longitude: not collected

Sample Information

Host: Apis mellifera

Isolation: -

Biosample Model: -

Collection Date: 2008-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR5259931
193.8 KB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 2
Arsenate_Detoxification 1
Dissimilatory_Arsenate_Reduction 1
Fermentation 1
Aerobic_Chemoheterotrophy 1
Invertebrate_Parasites 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Reduction 1
Ureolysis 1
Back to Amplicons List
Back to Table