SRR4427124 - Monochamus alternatus imago

Basic Information

Run: SRR4427124

Assay Type: AMPLICON

Biosample: SAMN05908214

Bytes: 34570517

Center Name: RURAL DEVELOPMENT ADMINISTRATION

Classification: 16S

Sequencing Information

Instrument: 454 GS FLX Titanium

Library Layout: SINGLE

Bioproject: PRJNA348558

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: Korea: Wanju

Latitude/Longitude: 35.83 N 127.04 E

Sample Information

Host: Monochamus alternatus imago

Isolation: -

Biosample Model: -

Collection Date: 2015-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR4427124
33.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 38
Fermentation 28
Nitrate_Reduction 26
Aerobic_Chemoheterotrophy 12
Human_Pathogens_All 7
Human_Associated 7
Animal_Parasites_Or_Symbionts 7
Ureolysis 7
Human_Pathogens_Diarrhea 5
Nitrate_Respiration 3
Nitrogen_Respiration 3
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Nitrite_Respiration 2
Methanol_Oxidation 1
Methylotrophy 1
Dark_Hydrogen_Oxidation 1
Dark_Thiosulfate_Oxidation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Plant_Pathogen 1
Aromatic_Hydrocarbon_Degradation 1
Aromatic_Compound_Degradation 1
Hydrocarbon_Degradation 1
Plastic_Degradation 1
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