SRR3932296 - Bactrocera oleae

Basic Information

Run: SRR3932296

Assay Type: AMPLICON

Biosample: SAMN04968080

Bytes: 53360880

Center Name: UNIVERSITY OF LIVERPOOL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA321174

Geographic Information

Country: Greece

Continent: Europe

Location Name: Greece

Latitude/Longitude: 35.35 N 24.45 E

Sample Information

Host: Bactrocera oleae

Isolation: -

Biosample Model: -

Collection Date: 2013-02-10

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR3932296
50.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 15
Aerobic_Chemoheterotrophy 13
Nitrate_Reduction 3
Nitrogen_Fixation 2
Fermentation 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Manganese_Oxidation 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
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