SRR3926739 - Colaphellus bowringi

Basic Information

Run: SRR3926739

Assay Type: AMPLICON

Biosample: SAMN05375323

Bytes: 22384365

Center Name: HUAZHONG AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA328587

Geographic Information

Country: China

Continent: Asia

Location Name: China: Wuhan

Latitude/Longitude: 30.4801 N 114.3645 E

Sample Information

Host: Colaphellus bowringi

Isolation: -

Biosample Model: -

Collection Date: 2015-12-20

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR3926739
21.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 38
Aerobic_Chemoheterotrophy 37
Aromatic_Compound_Degradation 29
Nitrate_Reduction 6
Fermentation 3
Nitrate_Respiration 2
Nitrogen_Respiration 2
Nitrate_Ammonification 1
Nitrite_Ammonification 1
Nitrite_Respiration 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Plant_Pathogen 1
Intracellular_Parasites 1
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