SRR3723133 - Leptinotarsa decemlineata

Basic Information

Run: SRR3723133

Assay Type: AMPLICON

Biosample: SAMN05296516

Bytes: 153307727

Center Name: USDA-ARS CENTER FOR GRAIN AND ANIMAL HEALTH RESEARCH

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA326955

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Penn State University, University Park, PA

Latitude/Longitude: 40.8148 N 77.8653 W

Sample Information

Host: Leptinotarsa decemlineata

Isolation: -

Biosample Model: -

Collection Date: 2014-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR3723133
146.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 156
Aerobic_Chemoheterotrophy 125
Human_Associated 85
Animal_Parasites_Or_Symbionts 85
Human_Pathogens_All 82
Nitrate_Reduction 57
Aromatic_Compound_Degradation 46
Nitrate_Respiration 44
Nitrogen_Respiration 44
Fermentation 35
Human_Gut 4
Mammal_Gut 4
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