SRR3521305 - Periplaneta americana

Basic Information

Run: SRR3521305

Assay Type: AMPLICON

Biosample: SAMN04979091

Bytes: 81083032

Center Name: UNIVERSITY OF GEORGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA320546

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not collected

Latitude/Longitude: not collected

Sample Information

Host: Periplaneta americana

Isolation: -

Biosample Model: -

Collection Date: 1905-07-05

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR3521305

77.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 69

Chemoheterotrophy

Fermentation 56

Fermentation

Respiration_Of_Sulfur_Compounds 9

Respiration_Of_Sulfur_Compounds

Aerobic_Chemoheterotrophy 9

Aerobic_Chemoheterotrophy

Sulfate_Respiration 8

Sulfate_Respiration

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Methanogenesis 5

Methanogenesis

Human_Associated 5

Human_Associated

Ureolysis 5

Ureolysis

Hydrogenotrophic_Methanogenesis 4

Hydrogenotrophic_Methanogenesis

Sulfite_Respiration 3

Sulfite_Respiration

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Intracellular_Parasites 3

Intracellular_Parasites

Methanogenesis_By_Co2_Reduction_With_H2 2

Methanogenesis_By_Co2_Reduction_With_H2

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 2

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Methylotrophy 2

Methylotrophy

Human_Pathogens_All 2

Human_Pathogens_All

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Aromatic_Compound_Degradation 1

Aromatic_Compound_Degradation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

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