SRR28812766 - Trixagus meybohmi

Basic Information

Run: SRR28812766

Assay Type: AMPLICON

Biosample: SAMN41088897

Bytes: 61644201

Center Name: MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1062330

Geographic Information

Country: Belgium

Continent: Europe

Location Name: Belgium

Latitude/Longitude: 50.026488 N 4.622770 E

Sample Information

Host: Trixagus meybohmi

Isolation: -

Biosample Model: -

Collection Date: 2019-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR28812766
58.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 6
Aerobic_Chemoheterotrophy 5
Fermentation 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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