SRR28757833 - D. sibirica

Basic Information

Run: SRR28757833

Assay Type: AMPLICON

Biosample: SAMN41015344

Bytes: 17783669

Center Name: SYMBIO

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1102268

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Sample Information

Host: D. sibirica

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR28757833
17.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 10
Aerobic_Chemoheterotrophy 6
Animal_Parasites_Or_Symbionts 6
Nitrate_Reduction 6
Human_Pathogens_All 5
Human_Associated 5
Fermentation 4
Human_Pathogens_Septicemia 2
Human_Pathogens_Pneumonia 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Ureolysis 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrite_Respiration 1
Dark_Thiosulfate_Oxidation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Ligninolysis 1
Plant_Pathogen 1
Aromatic_Hydrocarbon_Degradation 1
Aromatic_Compound_Degradation 1
Hydrocarbon_Degradation 1
Fumarate_Respiration 1
Plastic_Degradation 1
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