SRR28757805 - C. varians

Basic Information

Run: SRR28757805

Assay Type: AMPLICON

Biosample: SAMN41015368

Bytes: 27655269

Center Name: SYMBIO

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1102268

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Sample Information

Host: C. varians

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR28757805
26.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 21
Aerobic_Chemoheterotrophy 18
Nitrate_Reduction 10
Nitrate_Respiration 8
Nitrogen_Respiration 8
Human_Pathogens_All 7
Human_Associated 7
Animal_Parasites_Or_Symbionts 7
Ureolysis 4
Methylotrophy 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Nitrite_Respiration 2
Dark_Sulfide_Oxidation 2
Dark_Sulfur_Oxidation 2
Dark_Thiosulfate_Oxidation 2
Dark_Oxidation_Of_Sulfur_Compounds 2
Predatory_Or_Exoparasitic 2
Methanotrophy 1
Methanol_Oxidation 1
Chitinolysis 1
Nitrogen_Fixation 1
Hydrocarbon_Degradation 1
Back to Amplicons List
Back to Table