SRR28757745 - G. sigillatus

Basic Information

Run: SRR28757745

Assay Type: AMPLICON

Biosample: SAMN41015394

Bytes: 19065383

Center Name: SYMBIO

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1102268

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Sample Information

Host: G. sigillatus

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR28757745
18.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Fermentation 46
Chemoheterotrophy 46
Human_Associated 15
Animal_Parasites_Or_Symbionts 15
Nitrate_Reduction 15
Human_Gut 12
Mammal_Gut 12
Ureolysis 12
Aerobic_Chemoheterotrophy 9
Human_Pathogens_All 4
Nitrate_Ammonification 1
Nitrite_Ammonification 1
Nitrite_Respiration 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Back to Amplicons List
Back to Table