SRR28757724 - G. bimaculatus

Basic Information

Run: SRR28757724

Assay Type: AMPLICON

Biosample: SAMN41015413

Bytes: 20884314

Center Name: SYMBIO

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1102268

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Sample Information

Host: G. bimaculatus

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR28757724
19.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 28
Fermentation 26
Nitrate_Reduction 18
Animal_Parasites_Or_Symbionts 17
Human_Gut 16
Human_Associated 16
Mammal_Gut 16
Nitrate_Ammonification 14
Nitrite_Ammonification 14
Nitrite_Respiration 14
Human_Pathogens_All 14
Nitrate_Respiration 14
Nitrogen_Respiration 14
Aerobic_Chemoheterotrophy 3
Invertebrate_Parasites 1
Aromatic_Compound_Degradation 1
Ureolysis 1
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