SRR28108362 - Musca domestica

Basic Information

Run: SRR28108362

Assay Type: WCS

Biosample: SAMN40147467

Bytes: 17965938

Center Name: SHANDONG FIRST MEDICAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1080678

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shandong,Taian

Latitude/Longitude: not applicable

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR28108362
17.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 58
Aerobic_Chemoheterotrophy 45
Nitrate_Reduction 36
Human_Associated 33
Animal_Parasites_Or_Symbionts 33
Human_Pathogens_All 29
Fermentation 24
Nitrate_Respiration 21
Nitrogen_Respiration 21
Human_Gut 6
Mammal_Gut 6
Human_Pathogens_Nosocomia 5
Ureolysis 5
Human_Pathogens_Septicemia 3
Human_Pathogens_Pneumonia 2
Human_Pathogens_Diarrhea 2
Aromatic_Compound_Degradation 1
Hydrocarbon_Degradation 1
Back to Amplicons List
Back to Table