SRR28108359 - Musca domestica

Basic Information

Run: SRR28108359

Assay Type: WCS

Biosample: SAMN40147470

Bytes: 19188820

Center Name: SHANDONG FIRST MEDICAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1080678

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shandong,Taian

Latitude/Longitude: not applicable

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR28108359
18.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 68
Human_Associated 60
Animal_Parasites_Or_Symbionts 60
Aerobic_Chemoheterotrophy 58
Nitrate_Reduction 49
Human_Pathogens_All 32
Human_Gut 31
Mammal_Gut 31
Nitrate_Respiration 26
Nitrogen_Respiration 26
Fermentation 25
Ureolysis 9
Human_Pathogens_Septicemia 4
Human_Pathogens_Pneumonia 3
Human_Pathogens_Nosocomia 2
Human_Pathogens_Diarrhea 2
Aromatic_Compound_Degradation 2
Hydrocarbon_Degradation 1
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