SRR27936601 - Oulema melanopus

Basic Information

Run: SRR27936601

Assay Type: AMPLICON

Biosample: SAMN39910995

Bytes: 83311410

Center Name: UNIVERSITY OF LAUSANNE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1075215

Quality Control Information

Filter Percentage: 1.0

QC Average Length: 301

Retained Reads: 0

Geographic Information

Country: Switzerland

Continent: Europe

Location Name: Switzerland

Latitude/Longitude: 46.398830 N 6.232938 E

Sample Information

Host: Oulema melanopus

Isolation: -

Biosample Model: -

Collection Date: 2021-06-15

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR27936601
79.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Intracellular_Parasites 7
Fermentation 5
Chemoheterotrophy 5
Sulfite_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Arsenite_Oxidation_Detoxification 1
Dissimilatory_Arsenite_Oxidation 1
Back to Amplicons List
Back to Table