SRR27445389 - not applicable

Basic Information

Run: SRR27445389

Assay Type: AMPLICON

Biosample: SAMN39275703

Bytes: 14043210

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Guiyang

Latitude/Longitude: 26.68 N 106.62 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-08-26

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27445389

13.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 112

Chemoheterotrophy

Aerobic_Chemoheterotrophy 92

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Ureolysis 11

Ureolysis

Fermentation 10

Fermentation

Predatory_Or_Exoparasitic 7

Predatory_Or_Exoparasitic

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Nitrogen_Fixation 5

Nitrogen_Fixation

Human_Pathogens_All 5

Human_Pathogens_All

Human_Associated 5

Human_Associated

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Chitinolysis 4

Chitinolysis

Nitrate_Reduction 4

Nitrate_Reduction

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Cellulolysis 2

Cellulolysis

Xylanolysis 2

Xylanolysis

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Manganese_Oxidation 1

Manganese_Oxidation

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