SRR27445378 - not applicable

Basic Information

Run: SRR27445378

Assay Type: AMPLICON

Biosample: SAMN39275713

Bytes: 14269966

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shangqiu

Latitude/Longitude: 33.93 N 116.45 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-29

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27445378

13.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 59

Chemoheterotrophy

Fermentation 32

Fermentation

Aerobic_Chemoheterotrophy 24

Aerobic_Chemoheterotrophy

Animal_Parasites_Or_Symbionts 9

Animal_Parasites_Or_Symbionts

Human_Associated 7

Human_Associated

Human_Gut 5

Human_Gut

Mammal_Gut 5

Mammal_Gut

Nitrate_Reduction 5

Nitrate_Reduction

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Ureolysis 3

Ureolysis

Nitrogen_Fixation 2

Nitrogen_Fixation

Xylanolysis 2

Xylanolysis

Human_Pathogens_All 2

Human_Pathogens_All

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Cellulolysis 1

Cellulolysis

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Manganese_Respiration 1

Manganese_Respiration

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Iron_Respiration 1

Iron_Respiration

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