SRR27445371 - not applicable

Basic Information

Run: SRR27445371

Assay Type: AMPLICON

Biosample: SAMN39275720

Bytes: 14209327

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shangqiu

Latitude/Longitude: 33.93 N 116.45 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-29

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR27445371
13.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 83
Aerobic_Chemoheterotrophy 65
Fermentation 14
Predatory_Or_Exoparasitic 11
Nitrate_Reduction 7
Human_Associated 6
Animal_Parasites_Or_Symbionts 6
Chitinolysis 5
Aromatic_Compound_Degradation 5
Xylanolysis 4
Human_Pathogens_All 4
Nitrate_Respiration 3
Nitrogen_Respiration 3
Methanol_Oxidation 2
Methylotrophy 2
Nitrogen_Fixation 2
Human_Gut 2
Mammal_Gut 2
Aerobic_Ammonia_Oxidation 1
Nitrification 1
Manganese_Oxidation 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Human_Pathogens_Nosocomia 1
Intracellular_Parasites 1
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