SRR27445339 - not applicable

Basic Information

Run: SRR27445339

Assay Type: AMPLICON

Biosample: SAMN39275749

Bytes: 14474300

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Nanjing

Latitude/Longitude: 31.33 N 118.89 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-27

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27445339

13.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 84

Chemoheterotrophy

Fermentation 40

Fermentation

Aerobic_Chemoheterotrophy 38

Aerobic_Chemoheterotrophy

Human_Associated 11

Human_Associated

Animal_Parasites_Or_Symbionts 11

Animal_Parasites_Or_Symbionts

Human_Gut 8

Human_Gut

Mammal_Gut 8

Mammal_Gut

Nitrate_Reduction 7

Nitrate_Reduction

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Human_Pathogens_All 3

Human_Pathogens_All

Sulfate_Respiration 2

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Chitinolysis 2

Chitinolysis

Nitrogen_Fixation 2

Nitrogen_Fixation

Xylanolysis 2

Xylanolysis

Photoheterotrophy 2

Photoheterotrophy

Phototrophy 2

Phototrophy

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Anoxygenic_Photoautotrophy_S_Oxidizing 1

Anoxygenic_Photoautotrophy_S_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Ureolysis 1

Ureolysis

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