SRR27445329 - not applicable

Basic Information

Run: SRR27445329

Assay Type: AMPLICON

Biosample: SAMN39275758

Bytes: 14811561

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Nanjing

Latitude/Longitude: 31.33 N 118.89 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-27

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27445329

14.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 110

Chemoheterotrophy

Aerobic_Chemoheterotrophy 74

Aerobic_Chemoheterotrophy

Fermentation 28

Fermentation

Nitrate_Reduction 13

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 12

Animal_Parasites_Or_Symbionts

Predatory_Or_Exoparasitic 10

Predatory_Or_Exoparasitic

Aromatic_Compound_Degradation 9

Aromatic_Compound_Degradation

Human_Associated 8

Human_Associated

Chitinolysis 6

Chitinolysis

Human_Pathogens_All 4

Human_Pathogens_All

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Ureolysis 4

Ureolysis

Xylanolysis 3

Xylanolysis

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 3

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 3

Oxygenic_Photoautotrophy

Photoautotrophy 3

Photoautotrophy

Phototrophy 3

Phototrophy

Cellulolysis 2

Cellulolysis

Intracellular_Parasites 2

Intracellular_Parasites

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Pathogens_Gastroenteritis 1

Human_Pathogens_Gastroenteritis

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