SRR27445304 - not applicable

Basic Information

Run: SRR27445304

Assay Type: AMPLICON

Biosample: SAMN39275679

Bytes: 13548025

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: QingYang

Latitude/Longitude: 35.73 N 107.65 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-22

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR27445304
12.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 26
Aerobic_Chemoheterotrophy 14
Fermentation 12
Animal_Parasites_Or_Symbionts 6
Human_Associated 5
Human_Gut 4
Mammal_Gut 4
Ureolysis 4
Nitrate_Reduction 3
Methanol_Oxidation 2
Methylotrophy 2
Nitrogen_Fixation 2
Human_Pathogens_Diarrhea 2
Human_Pathogens_All 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrite_Respiration 1
Dark_Sulfide_Oxidation 1
Dark_Sulfur_Oxidation 1
Dark_Thiosulfate_Oxidation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Aromatic_Compound_Degradation 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Predatory_Or_Exoparasitic 1
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