SRR27445296 - not applicable

Basic Information

Run: SRR27445296

Assay Type: AMPLICON

Biosample: SAMN39275686

Bytes: 14694434

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: QingYang

Latitude/Longitude: 35.73 N 107.65 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-22

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27445296

14.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 123

Chemoheterotrophy

Aerobic_Chemoheterotrophy 107

Aerobic_Chemoheterotrophy

Predatory_Or_Exoparasitic 12

Predatory_Or_Exoparasitic

Fermentation 8

Fermentation

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Chitinolysis 5

Chitinolysis

Xylanolysis 5

Xylanolysis

Methylotrophy 4

Methylotrophy

Nitrogen_Fixation 4

Nitrogen_Fixation

Nitrate_Reduction 3

Nitrate_Reduction

Ureolysis 3

Ureolysis

Methanotrophy 2

Methanotrophy

Methanol_Oxidation 2

Methanol_Oxidation

Human_Gut 2

Human_Gut

Human_Associated 2

Human_Associated

Mammal_Gut 2

Mammal_Gut

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Manganese_Oxidation 1

Manganese_Oxidation

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Human_Pathogens_All 1

Human_Pathogens_All

Iron_Respiration 1

Iron_Respiration

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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