SRR27445277 - not applicable

Basic Information

Run: SRR27445277

Assay Type: AMPLICON

Biosample: SAMN39275776

Bytes: 14807071

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Pingxiang

Latitude/Longitude: 27.62 N 113.87 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27445277

14.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 109

Chemoheterotrophy

Aerobic_Chemoheterotrophy 96

Aerobic_Chemoheterotrophy

Fermentation 8

Fermentation

Ureolysis 7

Ureolysis

Nitrate_Reduction 6

Nitrate_Reduction

Chitinolysis 5

Chitinolysis

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Predatory_Or_Exoparasitic 5

Predatory_Or_Exoparasitic

Nitrite_Respiration 3

Nitrite_Respiration

Human_Pathogens_All 3

Human_Pathogens_All

Human_Associated 3

Human_Associated

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 2

Nitrogen_Fixation

Iron_Respiration 2

Iron_Respiration

Fumarate_Respiration 2

Fumarate_Respiration

Knallgas_Bacteria 1

Knallgas_Bacteria

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Cellulolysis 1

Cellulolysis

Xylanolysis 1

Xylanolysis

Intracellular_Parasites 1

Intracellular_Parasites

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