SRR27445272 - not applicable

Basic Information

Run: SRR27445272

Assay Type: AMPLICON

Biosample: SAMN39275781

Bytes: 14328331

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Yingkou

Latitude/Longitude: 40.18 N 122.12 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-03

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR27445272
13.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 48
Fermentation 26
Aerobic_Chemoheterotrophy 19
Nitrate_Reduction 10
Human_Associated 8
Animal_Parasites_Or_Symbionts 8
Nitrate_Respiration 5
Nitrogen_Respiration 5
Methanol_Oxidation 4
Methylotrophy 4
Human_Pathogens_All 4
Human_Gut 4
Mammal_Gut 4
Ureolysis 3
Xylanolysis 2
Aromatic_Compound_Degradation 2
Sulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Cellulolysis 1
Back to Amplicons List
Back to Table