SRR27445257 - not applicable

Basic Information

Run: SRR27445257

Assay Type: AMPLICON

Biosample: SAMN39275794

Bytes: 14146054

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Yingkou

Latitude/Longitude: 40.18 N 122.12 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-09-03

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27445257

13.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 104

Chemoheterotrophy

Aerobic_Chemoheterotrophy 85

Aerobic_Chemoheterotrophy

Fermentation 12

Fermentation

Ureolysis 9

Ureolysis

Predatory_Or_Exoparasitic 8

Predatory_Or_Exoparasitic

Nitrate_Reduction 6

Nitrate_Reduction

Cellulolysis 4

Cellulolysis

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Nitrogen_Fixation 3

Nitrogen_Fixation

Manganese_Oxidation 3

Manganese_Oxidation

Human_Associated 3

Human_Associated

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Intracellular_Parasites 3

Intracellular_Parasites

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Chitinolysis 2

Chitinolysis

Xylanolysis 2

Xylanolysis

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_All 1

Human_Pathogens_All

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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