SRR27445187 - not applicable

Basic Information

Run: SRR27445187

Assay Type: AMPLICON

Biosample: SAMN39275656

Bytes: 14151751

Center Name: NINGBO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1061644

Geographic Information

Country: China

Continent: Asia

Location Name: China: Suzhou

Latitude/Longitude: 33.64 N 116.98 E

Sample Information

Host: not applicable

Isolation: -

Biosample Model: -

Collection Date: 2020-10-09

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR27445187

13.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 103

Chemoheterotrophy

Aerobic_Chemoheterotrophy 86

Aerobic_Chemoheterotrophy

Predatory_Or_Exoparasitic 11

Predatory_Or_Exoparasitic

Nitrate_Reduction 10

Nitrate_Reduction

Fermentation 9

Fermentation

Chitinolysis 5

Chitinolysis

Human_Associated 5

Human_Associated

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Xylanolysis 4

Xylanolysis

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Methylotrophy 3

Methylotrophy

Nitrogen_Fixation 3

Nitrogen_Fixation

Methanol_Oxidation 2

Methanol_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_All 2

Human_Pathogens_All

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Ureolysis 2

Ureolysis

Methanotrophy 1

Methanotrophy

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

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