SRR26832944 - Arma custos

Basic Information

Run: SRR26832944

Assay Type: AMPLICON

Biosample: SAMN38196699

Bytes: 313517589

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1036837

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Latitude/Longitude: missing

Sample Information

Host: Arma custos

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR26832944

299.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 80

Chemoheterotrophy

Aerobic_Chemoheterotrophy 66

Aerobic_Chemoheterotrophy

Nitrate_Reduction 17

Nitrate_Reduction

Aromatic_Compound_Degradation 14

Aromatic_Compound_Degradation

Human_Associated 13

Human_Associated

Animal_Parasites_Or_Symbionts 13

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 12

Human_Pathogens_All

Nitrate_Respiration 11

Nitrate_Respiration

Nitrogen_Respiration 11

Nitrogen_Respiration

Ureolysis 10

Ureolysis

Methanol_Oxidation 6

Methanol_Oxidation

Methylotrophy 6

Methylotrophy

Fermentation 6

Fermentation

Nitrogen_Fixation 4

Nitrogen_Fixation

Chitinolysis 2

Chitinolysis

Intracellular_Parasites 2

Intracellular_Parasites

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Plant_Pathogen 1

Plant_Pathogen

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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