SRR26832943 - Arma custos

Basic Information

Run: SRR26832943

Assay Type: AMPLICON

Biosample: SAMN38196700

Bytes: 458016325

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1036837

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Latitude/Longitude: missing

Sample Information

Host: Arma custos

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR26832943

436.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 162

Chemoheterotrophy

Aerobic_Chemoheterotrophy 118

Aerobic_Chemoheterotrophy

Nitrate_Reduction 36

Nitrate_Reduction

Fermentation 34

Fermentation

Animal_Parasites_Or_Symbionts 29

Animal_Parasites_Or_Symbionts

Human_Associated 26

Human_Associated

Nitrate_Respiration 24

Nitrate_Respiration

Nitrogen_Respiration 24

Nitrogen_Respiration

Human_Pathogens_All 23

Human_Pathogens_All

Aromatic_Compound_Degradation 21

Aromatic_Compound_Degradation

Methanol_Oxidation 14

Methanol_Oxidation

Methylotrophy 14

Methylotrophy

Ureolysis 10

Ureolysis

Nitrate_Denitrification 8

Nitrate_Denitrification

Nitrite_Denitrification 8

Nitrite_Denitrification

Denitrification 8

Denitrification

Nitrite_Respiration 8

Nitrite_Respiration

Dark_Hydrogen_Oxidation 6

Dark_Hydrogen_Oxidation

Chitinolysis 3

Chitinolysis

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Nitrogen_Fixation 2

Nitrogen_Fixation

Human_Pathogens_Nosocomia 2

Human_Pathogens_Nosocomia

Aliphatic_Non_Methane_Hydrocarbon_Degradation 2

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Meningitis 1

Human_Pathogens_Meningitis

Plant_Pathogen 1

Plant_Pathogen

Intracellular_Parasites 1

Intracellular_Parasites

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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