SRR26832928 - Durganda rubra

Basic Information

Run: SRR26832928

Assay Type: AMPLICON

Biosample: SAMN38196713

Bytes: 481006894

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1036837

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Latitude/Longitude: missing

Sample Information

Host: Durganda rubra

Isolation: -

Biosample Model: -

Collection Date: 2022-05-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR26832928

458.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 337

Chemoheterotrophy

Aerobic_Chemoheterotrophy 309

Aerobic_Chemoheterotrophy

Nitrate_Reduction 22

Nitrate_Reduction

Aromatic_Compound_Degradation 20

Aromatic_Compound_Degradation

Animal_Parasites_Or_Symbionts 19

Animal_Parasites_Or_Symbionts

Human_Associated 18

Human_Associated

Nitrate_Respiration 17

Nitrate_Respiration

Nitrogen_Respiration 17

Nitrogen_Respiration

Human_Pathogens_All 15

Human_Pathogens_All

Nitrogen_Fixation 13

Nitrogen_Fixation

Fermentation 13

Fermentation

Predatory_Or_Exoparasitic 13

Predatory_Or_Exoparasitic

Ureolysis 13

Ureolysis

Intracellular_Parasites 11

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 9

Nonphotosynthetic_Cyanobacteria

Methanol_Oxidation 5

Methanol_Oxidation

Methylotrophy 5

Methylotrophy

Xylanolysis 5

Xylanolysis

Photoheterotrophy 5

Photoheterotrophy

Phototrophy 5

Phototrophy

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Nitrite_Respiration 3

Nitrite_Respiration

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Anoxygenic_Photoautotrophy_S_Oxidizing 3

Anoxygenic_Photoautotrophy_S_Oxidizing

Anoxygenic_Photoautotrophy 3

Anoxygenic_Photoautotrophy

Photoautotrophy 3

Photoautotrophy

Chitinolysis 2

Chitinolysis

Aliphatic_Non_Methane_Hydrocarbon_Degradation 2

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

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