SRR26533648 - Solanum lycopersicum

Basic Information

Run: SRR26533648

Assay Type: AMPLICON

Biosample: SAMN37992514

Bytes: 16087359

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1032433

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: Minna

Latitude/Longitude: 9.57903483 N 6.55435700 E

Sample Information

Host: Solanum lycopersicum

Isolation: -

Biosample Model: -

Collection Date: 2022-08-05

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR26533648
15.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 20
Aerobic_Chemoheterotrophy 18
Methanol_Oxidation 2
Methylotrophy 2
Fermentation 2
Aromatic_Compound_Degradation 2
Ureolysis 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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