SRR26533646 - Solanum lycopersicum

Basic Information

Run: SRR26533646

Assay Type: AMPLICON

Biosample: SAMN37992498

Bytes: 13972330

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1032433

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: Abeokuta

Latitude/Longitude: 7.14763983 N 3.3618808 E

Sample Information

Host: Solanum lycopersicum

Isolation: -

Biosample Model: -

Collection Date: 2022-08-05

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR26533646
13.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 89
Aerobic_Chemoheterotrophy 76
Aromatic_Compound_Degradation 13
Nitrate_Reduction 10
Fermentation 9
Methanol_Oxidation 7
Methylotrophy 7
Ureolysis 7
Nitrate_Denitrification 4
Nitrite_Denitrification 4
Denitrification 4
Dark_Hydrogen_Oxidation 4
Nitrite_Respiration 4
Nitrate_Respiration 4
Nitrogen_Respiration 4
Human_Pathogens_All 3
Human_Associated 3
Animal_Parasites_Or_Symbionts 3
Photoheterotrophy 2
Phototrophy 2
Nitrogen_Fixation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_Diarrhea 1
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Intracellular_Parasites 1
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