SRR26533637 - Solanum lycopersicum

Basic Information

Run: SRR26533637

Assay Type: AMPLICON

Biosample: SAMN37992524

Bytes: 9888226

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1032433

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: Bagwai

Latitude/Longitude: 12.153211 N 8.137358 E

Sample Information

Host: Solanum lycopersicum

Isolation: -

Biosample Model: -

Collection Date: 2022-08-05

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR26533637

9.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 54

Chemoheterotrophy

Aerobic_Chemoheterotrophy 44

Aerobic_Chemoheterotrophy

Ureolysis 9

Ureolysis

Methanol_Oxidation 5

Methanol_Oxidation

Methylotrophy 5

Methylotrophy

Fermentation 5

Fermentation

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrate_Reduction 3

Nitrate_Reduction

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_All 1

Human_Pathogens_All

Human_Associated 1

Human_Associated

Animal_Parasites_Or_Symbionts 1

Animal_Parasites_Or_Symbionts

Plant_Pathogen 1

Plant_Pathogen

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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