SRR26381560 - Polyphagozerra coffeae

Basic Information

Run: SRR26381560

Assay Type: AMPLICON

Biosample: SAMN37776907

Bytes: 26382035

Center Name: ZHEJIANG A&F UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Sequel II

Library Layout: SINGLE

Bioproject: PRJNA1027071

Geographic Information

Country: China

Continent: Asia

Location Name: China:Zhejiang and Anhui

Latitude/Longitude: missing

Sample Information

Host: Polyphagozerra coffeae

Isolation: -

Biosample Model: -

Collection Date: 2024-08-21

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR26381560
25.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Aerobic_Chemoheterotrophy 15
Chemoheterotrophy 15
Nitrogen_Fixation 6
Nitrate_Reduction 3
Nitrate_Respiration 2
Nitrogen_Respiration 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Plant_Pathogen 1
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