SRR25992752 - Dorcus hopei hopei

Basic Information

Run: SRR25992752

Assay Type: AMPLICON

Biosample: SAMN37321253

Bytes: 14801479

Center Name: ZHEJIANG SCI-TECH UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1014221

Geographic Information

Country: China

Continent: Asia

Location Name: China:Hangzhou

Latitude/Longitude: 30 N 120 E

Sample Information

Host: Dorcus hopei hopei

Isolation: -

Biosample Model: -

Collection Date: 2024-05-22

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR25992752

14.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 53

Chemoheterotrophy

Fermentation 24

Fermentation

Aerobic_Chemoheterotrophy 22

Aerobic_Chemoheterotrophy

Nitrate_Reduction 12

Nitrate_Reduction

Human_Associated 6

Human_Associated

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Methylotrophy 5

Methylotrophy

Human_Gut 5

Human_Gut

Mammal_Gut 5

Mammal_Gut

Methanol_Oxidation 4

Methanol_Oxidation

Human_Pathogens_All 3

Human_Pathogens_All

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 3

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 3

Oxygenic_Photoautotrophy

Photoautotrophy 3

Photoautotrophy

Phototrophy 3

Phototrophy

Ureolysis 3

Ureolysis

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Methanotrophy 1

Methanotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Human_Pathogens_Gastroenteritis 1

Human_Pathogens_Gastroenteritis

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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