SRR25992749 - Dorcus hopei hopei

Basic Information

Run: SRR25992749

Assay Type: AMPLICON

Biosample: SAMN37321238

Bytes: 11401495

Center Name: ZHEJIANG SCI-TECH UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1014221

Geographic Information

Country: China

Continent: Asia

Location Name: China:Hangzhou

Latitude/Longitude: 30 N 120 E

Sample Information

Host: Dorcus hopei hopei

Isolation: -

Biosample Model: -

Collection Date: 2024-05-22

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR25992749

10.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 22

Chemoheterotrophy

Aerobic_Chemoheterotrophy 13

Aerobic_Chemoheterotrophy

Fermentation 7

Fermentation

Nitrate_Reduction 3

Nitrate_Reduction

Methylotrophy 2

Methylotrophy

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 2

Aromatic_Compound_Degradation

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Methanol_Oxidation 1

Methanol_Oxidation

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Cellulolysis 1

Cellulolysis

Human_Pathogens_All 1

Human_Pathogens_All

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Ureolysis 1

Ureolysis

Back to Amplicons List

Back to Table