SRR25734100 - Musca domestica

Basic Information

Run: SRR25734100

Assay Type: WCS

Biosample: SAMN37116318

Bytes: 30048378

Center Name: SHANDONG FIRST MEDICAL UNIVERSITY AND SHANDONG ACADEMY OF MEDICAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA1008283

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shandong,Jinan

Latitude/Longitude: not applicable

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR25734100
28.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 46
Fermentation 28
Aerobic_Chemoheterotrophy 28
Nitrate_Reduction 18
Human_Pathogens_All 9
Human_Associated 9
Animal_Parasites_Or_Symbionts 9
Ureolysis 4
Human_Pathogens_Septicemia 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Human_Pathogens_Pneumonia 1
Human_Pathogens_Diarrhea 1
Human_Gut 1
Mammal_Gut 1
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