SRR25602833 - Agave_cupreata

Basic Information

Run: SRR25602833

Assay Type: AMPLICON

Biosample: SAMN36919305

Bytes: 87755339

Center Name: INECOL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1004019

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Guerrero

Latitude/Longitude: not applicable

Sample Information

Host: Agave_cupreata

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Broad Scale: Forest

Local Scale: not applicable

Medium: not applicable

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR25602833
83.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 45
Fermentation 44
Nitrate_Reduction 14
Ureolysis 14
Aerobic_Chemoheterotrophy 1
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