SRR25602830 - Agave_cupreata

Basic Information

Run: SRR25602830

Assay Type: AMPLICON

Biosample: SAMN36919316

Bytes: 178401338

Center Name: INECOL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1004019

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Michoacan

Latitude/Longitude: not applicable

Sample Information

Host: Agave_cupreata

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Broad Scale: Forest

Local Scale: not applicable

Medium: not applicable

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR25602830
170.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 20
Fermentation 11
Aerobic_Chemoheterotrophy 9
Nitrate_Reduction 3
Back to Amplicons List
Back to Table