SRR25602825 - Agave_salmiana

Basic Information

Run: SRR25602825

Assay Type: AMPLICON

Biosample: SAMN36919321

Bytes: 71225829

Center Name: INECOL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1004019

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Tlaxcala

Latitude/Longitude: not applicable

Sample Information

Host: Agave_salmiana

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Broad Scale: Agriculture

Local Scale: not applicable

Medium: not applicable

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR25602825
67.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 35
Fermentation 29
Aerobic_Chemoheterotrophy 6
Aromatic_Compound_Degradation 2
Nitrate_Reduction 2
Ureolysis 2
Human_Pathogens_All 1
Human_Gut 1
Human_Associated 1
Mammal_Gut 1
Animal_Parasites_Or_Symbionts 1
Predatory_Or_Exoparasitic 1
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