SRR25602816 - Agave_tequilana

Basic Information

Run: SRR25602816

Assay Type: AMPLICON

Biosample: SAMN36919311

Bytes: 66968061

Center Name: INECOL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA1004019

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Jalisco

Latitude/Longitude: not applicable

Sample Information

Host: Agave_tequilana

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Broad Scale: Agriculture

Local Scale: not applicable

Medium: not applicable

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR25602816
63.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 59
Fermentation 57
Aerobic_Chemoheterotrophy 2
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