SRR25394283 - Coconut

Basic Information

Run: SRR25394283

Assay Type: AMPLICON

Biosample: SAMN36680420

Bytes: 8398977

Center Name: NATIONAL TAIWAN UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Sequel II

Library Layout: SINGLE

Bioproject: PRJNA997560

Geographic Information

Country: Taiwan

Continent: Asia

Location Name: Taiwan

Latitude/Longitude: 22.61949 N 120.5668 E

Sample Information

Host: Coconut

Isolation: -

Biosample Model: -

Collection Date: 2020-07-09

Host Sex: -

Environmental Information

Broad Scale: beetle microbiome

Local Scale: intestine

Medium: soil

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR25394283
8.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 9
Fermentation 7
Aerobic_Chemoheterotrophy 3
Nonphotosynthetic_Cyanobacteria 2
Human_Gut 1
Human_Associated 1
Mammal_Gut 1
Animal_Parasites_Or_Symbionts 1
Plastic_Degradation 1
Back to Amplicons List
Back to Table