SRR24825907 - Litchi chinensis

Basic Information

Run: SRR24825907

Assay Type: AMPLICON

Biosample: SAMN35619085

Bytes: 17157173

Center Name: ICAR RESEARCH COMPLEX FOR EASTERN REGION ICAR PARISAR, P. O. BIHAR VETERINARY COLLEGE, PATNA, BIHAR

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA980004

Geographic Information

Country: India

Continent: Asia

Location Name: India

Latitude/Longitude: 23.75 N 85.50 E

Sample Information

Host: Litchi chinensis

Isolation: -

Biosample Model: -

Collection Date: 2022-03-12

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR24825907
16.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 131
Aerobic_Chemoheterotrophy 72
Fermentation 32
Ureolysis 17
Methanol_Oxidation 15
Methylotrophy 15
Animal_Parasites_Or_Symbionts 13
Human_Associated 11
Aromatic_Compound_Degradation 8
Aerobic_Ammonia_Oxidation 7
Nitrification 7
Human_Gut 7
Mammal_Gut 7
Nitrate_Reduction 7
Phototrophy 6
Human_Pathogens_All 5
Photoautotrophy 4
Nitrate_Denitrification 3
Nitrite_Denitrification 3
Denitrification 3
Dark_Hydrogen_Oxidation 3
Nitrite_Respiration 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Photosynthetic_Cyanobacteria 3
Oxygenic_Photoautotrophy 3
Photoheterotrophy 3
Methanogenesis_By_Co2_Reduction_With_H2 2
Hydrogenotrophic_Methanogenesis 2
Methanogenesis 2
Dark_Sulfide_Oxidation 2
Dark_Sulfur_Oxidation 2
Dark_Thiosulfate_Oxidation 2
Dark_Oxidation_Of_Sulfur_Compounds 2
Predatory_Or_Exoparasitic 2
Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1
Nitrogen_Fixation 1
Cellulolysis 1
Xylanolysis 1
Anoxygenic_Photoautotrophy_H2_Oxidizing 1
Anoxygenic_Photoautotrophy 1
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