SRR24825906 - Litchi chinensis

Basic Information

Run: SRR24825906

Assay Type: AMPLICON

Biosample: SAMN35619094

Bytes: 21000844

Center Name: ICAR RESEARCH COMPLEX FOR EASTERN REGION ICAR PARISAR, P. O. BIHAR VETERINARY COLLEGE, PATNA, BIHAR

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA980004

Geographic Information

Country: India

Continent: Asia

Location Name: India

Latitude/Longitude: 23.75 N 85.50 E

Sample Information

Host: Litchi chinensis

Isolation: -

Biosample Model: -

Collection Date: 2022-03-12

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR24825906

20.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 114

Chemoheterotrophy

Aerobic_Chemoheterotrophy 76

Aerobic_Chemoheterotrophy

Fermentation 28

Fermentation

Animal_Parasites_Or_Symbionts 13

Animal_Parasites_Or_Symbionts

Human_Associated 10

Human_Associated

Methylotrophy 9

Methylotrophy

Nitrate_Reduction 9

Nitrate_Reduction

Methanol_Oxidation 8

Methanol_Oxidation

Nitrate_Respiration 7

Nitrate_Respiration

Nitrogen_Respiration 7

Nitrogen_Respiration

Ureolysis 7

Ureolysis

Human_Gut 6

Human_Gut

Mammal_Gut 6

Mammal_Gut

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Aerobic_Ammonia_Oxidation 4

Aerobic_Ammonia_Oxidation

Nitrification 4

Nitrification

Human_Pathogens_All 4

Human_Pathogens_All

Phototrophy 4

Phototrophy

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrite_Respiration 3

Nitrite_Respiration

Photoautotrophy 3

Photoautotrophy

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoheterotrophy 2

Photoheterotrophy

Methanotrophy 1

Methanotrophy

Chitinolysis 1

Chitinolysis

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Plant_Pathogen 1

Plant_Pathogen

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Anoxygenic_Photoautotrophy_H2_Oxidizing 1

Anoxygenic_Photoautotrophy_H2_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

Back to Amplicons List

Back to Table