SRR24825900 - Litchi chinensis

Basic Information

Run: SRR24825900

Assay Type: AMPLICON

Biosample: SAMN35619100

Bytes: 19932444

Center Name: ICAR RESEARCH COMPLEX FOR EASTERN REGION ICAR PARISAR, P. O. BIHAR VETERINARY COLLEGE, PATNA, BIHAR

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA980004

Geographic Information

Country: India

Continent: Asia

Location Name: India

Latitude/Longitude: 23.75 N 85.50 E

Sample Information

Host: Litchi chinensis

Isolation: -

Biosample Model: -

Collection Date: 2022-03-12

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR24825900
19.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 36
Fermentation 23
Aerobic_Chemoheterotrophy 13
Human_Associated 9
Animal_Parasites_Or_Symbionts 9
Human_Gut 7
Mammal_Gut 7
Ureolysis 7
Methanol_Oxidation 3
Methylotrophy 3
Nitrate_Reduction 3
Cellulolysis 2
Human_Pathogens_All 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Xylanolysis 1
Aromatic_Compound_Degradation 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Nonphotosynthetic_Cyanobacteria 1
Back to Amplicons List
Back to Table