SRR24825897 - Litchi chinensis

Basic Information

Run: SRR24825897

Assay Type: AMPLICON

Biosample: SAMN35619103

Bytes: 16090229

Center Name: ICAR RESEARCH COMPLEX FOR EASTERN REGION ICAR PARISAR, P. O. BIHAR VETERINARY COLLEGE, PATNA, BIHAR

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA980004

Geographic Information

Country: India

Continent: Asia

Location Name: India

Latitude/Longitude: 23.75 N 85.50 E

Sample Information

Host: Litchi chinensis

Isolation: -

Biosample Model: -

Collection Date: 2022-03-12

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR24825897

15.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 134

Chemoheterotrophy

Aerobic_Chemoheterotrophy 69

Aerobic_Chemoheterotrophy

Fermentation 53

Fermentation

Phototrophy 19

Phototrophy

Animal_Parasites_Or_Symbionts 18

Animal_Parasites_Or_Symbionts

Photoautotrophy 18

Photoautotrophy

Photosynthetic_Cyanobacteria 17

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 17

Oxygenic_Photoautotrophy

Human_Associated 10

Human_Associated

Human_Gut 9

Human_Gut

Mammal_Gut 9

Mammal_Gut

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Methanol_Oxidation 6

Methanol_Oxidation

Methylotrophy 6

Methylotrophy

Nitrate_Reduction 6

Nitrate_Reduction

Ureolysis 5

Ureolysis

Aerobic_Ammonia_Oxidation 4

Aerobic_Ammonia_Oxidation

Nitrification 4

Nitrification

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 2

Nitrogen_Fixation

Nitrite_Respiration 2

Nitrite_Respiration

Photoheterotrophy 2

Photoheterotrophy

Chitinolysis 1

Chitinolysis

Xylanolysis 1

Xylanolysis

Manganese_Oxidation 1

Manganese_Oxidation

Human_Pathogens_All 1

Human_Pathogens_All

Fumarate_Respiration 1

Fumarate_Respiration

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Anoxygenic_Photoautotrophy_H2_Oxidizing 1

Anoxygenic_Photoautotrophy_H2_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

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