SRR24825895 - Litchi chinensis

Basic Information

Run: SRR24825895

Assay Type: AMPLICON

Biosample: SAMN35619104

Bytes: 19594204

Center Name: ICAR RESEARCH COMPLEX FOR EASTERN REGION ICAR PARISAR, P. O. BIHAR VETERINARY COLLEGE, PATNA, BIHAR

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA980004

Geographic Information

Country: India

Continent: Asia

Location Name: India

Latitude/Longitude: 23.75 N 85.50 E

Sample Information

Host: Litchi chinensis

Isolation: -

Biosample Model: -

Collection Date: 2022-03-12

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR24825895

18.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 141

Chemoheterotrophy

Aerobic_Chemoheterotrophy 92

Aerobic_Chemoheterotrophy

Fermentation 30

Fermentation

Ureolysis 15

Ureolysis

Animal_Parasites_Or_Symbionts 11

Animal_Parasites_Or_Symbionts

Human_Associated 9

Human_Associated

Aerobic_Ammonia_Oxidation 8

Aerobic_Ammonia_Oxidation

Nitrification 8

Nitrification

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Human_Pathogens_All 6

Human_Pathogens_All

Nitrogen_Fixation 5

Nitrogen_Fixation

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Phototrophy 5

Phototrophy

Photoautotrophy 4

Photoautotrophy

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Nitrate_Reduction 3

Nitrate_Reduction

Photosynthetic_Cyanobacteria 3

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 3

Oxygenic_Photoautotrophy

Methanogenesis 2

Methanogenesis

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Photoheterotrophy 2

Photoheterotrophy

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Nitrite_Respiration 1

Nitrite_Respiration

Xylanolysis 1

Xylanolysis

Manganese_Oxidation 1

Manganese_Oxidation

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Anoxygenic_Photoautotrophy_H2_Oxidizing 1

Anoxygenic_Photoautotrophy_H2_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

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