SRR24825890 - Litchi chinensis

Basic Information

Run: SRR24825890

Assay Type: AMPLICON

Biosample: SAMN35619087

Bytes: 16160945

Center Name: ICAR RESEARCH COMPLEX FOR EASTERN REGION ICAR PARISAR, P. O. BIHAR VETERINARY COLLEGE, PATNA, BIHAR

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA980004

Geographic Information

Country: India

Continent: Asia

Location Name: India

Latitude/Longitude: 23.75 N 85.50 E

Sample Information

Host: Litchi chinensis

Isolation: -

Biosample Model: -

Collection Date: 2022-03-12

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR24825890

15.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 197

Chemoheterotrophy

Aerobic_Chemoheterotrophy 111

Aerobic_Chemoheterotrophy

Fermentation 66

Fermentation

Animal_Parasites_Or_Symbionts 25

Animal_Parasites_Or_Symbionts

Human_Associated 19

Human_Associated

Phototrophy 19

Phototrophy

Human_Gut 16

Human_Gut

Mammal_Gut 16

Mammal_Gut

Photoautotrophy 14

Photoautotrophy

Photosynthetic_Cyanobacteria 13

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 13

Oxygenic_Photoautotrophy

Nitrate_Reduction 11

Nitrate_Reduction

Ureolysis 11

Ureolysis

Aromatic_Compound_Degradation 10

Aromatic_Compound_Degradation

Nitrogen_Fixation 8

Nitrogen_Fixation

Methylotrophy 7

Methylotrophy

Nitrate_Respiration 7

Nitrate_Respiration

Nitrogen_Respiration 7

Nitrogen_Respiration

Methanol_Oxidation 6

Methanol_Oxidation

Photoheterotrophy 6

Photoheterotrophy

Aerobic_Ammonia_Oxidation 5

Aerobic_Ammonia_Oxidation

Nitrification 5

Nitrification

Nitrate_Denitrification 4

Nitrate_Denitrification

Nitrite_Denitrification 4

Nitrite_Denitrification

Denitrification 4

Denitrification

Nitrite_Respiration 4

Nitrite_Respiration

Nonphotosynthetic_Cyanobacteria 4

Nonphotosynthetic_Cyanobacteria

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Human_Pathogens_All 3

Human_Pathogens_All

Chitinolysis 2

Chitinolysis

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Intracellular_Parasites 2

Intracellular_Parasites

Methanotrophy 1

Methanotrophy

Xylanolysis 1

Xylanolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Iron_Respiration 1

Iron_Respiration

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Anoxygenic_Photoautotrophy_S_Oxidizing 1

Anoxygenic_Photoautotrophy_S_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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