SRR2420890 - Monochamus galloprovincialis

Basic Information

Run: SRR2420890

Assay Type: AMPLICON

Biosample: SAMN04028720

Bytes: 24919602

Center Name: AVEIRO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: 454 GS FLX Titanium

Library Layout: SINGLE

Bioproject: PRJNA295686

Geographic Information

Country: Portugal

Continent: Europe

Location Name: Portugal: Comporta, Penacova

Latitude/Longitude: not applicable

Sample Information

Host: Monochamus galloprovincialis

Isolation: -

Biosample Model: -

Collection Date: 2013-04-01

Host Sex: male

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR2420890
23.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 873
Aerobic_Chemoheterotrophy 595
Nitrate_Reduction 546
Fermentation 278
Animal_Parasites_Or_Symbionts 54
Human_Gut 33
Human_Associated 33
Mammal_Gut 33
Chitinolysis 21
Aromatic_Compound_Degradation 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
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