SRR2410862 - Monochamus alternatus

Basic Information

Run: SRR2410862

Assay Type: AMPLICON

Biosample: SAMN04088068

Bytes: 16796416

Center Name: AVEIRO UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: 454 GS FLX Titanium

Library Layout: SINGLE

Bioproject: PRJNA295686

Geographic Information

Country: Japan

Continent: Asia

Location Name: Japan: Hikobe

Latitude/Longitude: not applicable

Sample Information

Host: Monochamus alternatus

Isolation: -

Biosample Model: -

Collection Date: 2013-05-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR2410862

16.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 538

Chemoheterotrophy

Fermentation 413

Fermentation

Nitrate_Reduction 402

Nitrate_Reduction

Aerobic_Chemoheterotrophy 125

Aerobic_Chemoheterotrophy

Human_Pathogens_All 24

Human_Pathogens_All

Human_Associated 24

Human_Associated

Animal_Parasites_Or_Symbionts 24

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 24

Nitrate_Respiration

Nitrogen_Respiration 24

Nitrogen_Respiration

Xylanolysis 1

Xylanolysis

Aromatic_Compound_Degradation 1

Aromatic_Compound_Degradation

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