SRR23968988 - Lonchodes brevipes

Basic Information

Run: SRR23968988

Assay Type: AMPLICON

Biosample: SAMN33877341

Bytes: 40929124

Center Name: YALE-NUS COLLEGE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA948164

Geographic Information

Country: Singapore

Continent: Asia

Location Name: Singapore

Latitude/Longitude: 1.18 N 103.46 E

Sample Information

Host: Lonchodes brevipes

Isolation: -

Biosample Model: -

Collection Date: 2020-07-01

Host Sex: -

Environmental Information

Broad Scale: tropics

Local Scale: urban park

Medium: insect frass

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR23968988

39.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 95

Chemoheterotrophy

Aerobic_Chemoheterotrophy 66

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 15

Aromatic_Compound_Degradation

Aerobic_Ammonia_Oxidation 11

Aerobic_Ammonia_Oxidation

Nitrification 11

Nitrification

Methanol_Oxidation 5

Methanol_Oxidation

Methylotrophy 5

Methylotrophy

Nitrate_Respiration 4

Nitrate_Respiration

Nitrate_Reduction 4

Nitrate_Reduction

Nitrogen_Respiration 4

Nitrogen_Respiration

Ureolysis 4

Ureolysis

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Methanogenesis 2

Methanogenesis

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Fermentation 2

Fermentation

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Xylanolysis 1

Xylanolysis

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Back to Amplicons List

Back to Table