SRR23968984 - Lonchodes brevipes

Basic Information

Run: SRR23968984

Assay Type: AMPLICON

Biosample: SAMN33877345

Bytes: 26231407

Center Name: YALE-NUS COLLEGE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA948164

Geographic Information

Country: Singapore

Continent: Asia

Location Name: Singapore

Latitude/Longitude: 1.18 N 103.46 E

Sample Information

Host: Lonchodes brevipes

Isolation: -

Biosample Model: -

Collection Date: 2020-07-01

Host Sex: -

Environmental Information

Broad Scale: tropics

Local Scale: urban park

Medium: insect frass

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR23968984

25.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 63

Chemoheterotrophy

Aerobic_Chemoheterotrophy 52

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 13

Aromatic_Compound_Degradation

Nitrate_Reduction 12

Nitrate_Reduction

Nitrate_Respiration 7

Nitrate_Respiration

Nitrogen_Respiration 7

Nitrogen_Respiration

Human_Pathogens_All 6

Human_Pathogens_All

Human_Associated 6

Human_Associated

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Fermentation 5

Fermentation

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Nitrite_Respiration 3

Nitrite_Respiration

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Ureolysis 2

Ureolysis

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Chitinolysis 1

Chitinolysis

Nitrogen_Fixation 1

Nitrogen_Fixation

Xylanolysis 1

Xylanolysis

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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